Transferring attachments is a post process of creating new relationship classes and transferring potentially large amounts of binary information in blob fields into a new table in the geodatabase. This could be a reason why the tool is stuck at 100% for a long time - the maintain attachments setting never got disabled for tools run in the Geoprocessing pane UI. You can think about it as a one way street - the environments set in the project are automatically derived into arcpy.env, but changes in arcpy.env don't flow up to the project environments. Peter MacKenzie‌ did you set the environment in the Python window via = False, and then run the tool through the Geoprocessing pane UI? Once the project environments are established, changing the arcpy.env does not impact the environment settings for your project or the tools run in the Geoprocessing pane UI.
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